PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G18070.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 204aa MW: 22362.5 Da PI: 10.7441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G18070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.5	1.9e-09	19	80	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + OPUNC04G18070.1 19 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 80 8********************************98766...57889*********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.6E-8	18	81	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-4	19	76	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.249	20	73	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASSPTNTAA NARRVPPPCW TPDETLALAR AYTARRLAVG RAHLTSADWA AVADAATPTK 60 TARQCRHKVE KLRRRLRSKR RRPCPLLDAI DLLDGPSPSA SPSQSPSPPP PASPPPPPAP 120 SSPPPPKKRR LPDADADADP EDDGESDVVK ALRAIGEGFL RAEQRRMEAA RKTQQMRMEM 180 ALRHLDSQRR LMEALVDRIV DSLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	KLRRRLR
2	71	77	LRRRLRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606695	0.0	AL606695.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence.
GenBank	AL606728	0.0	AL606728.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653630.1	8e-84	PREDICTED: leiomodin-2-like, partial
TrEMBL	A0A0E0KTE6	1e-138	A0A0E0KTE6_ORYPU; Uncharacterized protein
STRING	OPUNC04G18070.1	1e-139	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24