PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 242aa    MW: 26866.5 Da    PI: 8.7126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1978132256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  OPUNC04G18440.1  78 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 132
                      788899***********************************************98 PP
2HD-ZIP_I/II1291.9e-4178167191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  OPUNC04G18440.1  78 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 167
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1864128IPR009057Homeodomain-like
SuperFamilySSF466898.36E-1970135IPR009057Homeodomain-like
PROSITE profilePS5007117.34674134IPR001356Homeobox domain
SMARTSM003898.3E-1876138IPR001356Homeobox domain
CDDcd000867.37E-1778135No hitNo description
PfamPF000468.5E-1778132IPR001356Homeobox domain
PRINTSPR000314.8E-6105114IPR000047Helix-turn-helix motif
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PRINTSPR000314.8E-6114130IPR000047Helix-turn-helix motif
SMARTSM003402.7E-24134178IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-11134168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MERAEDLRLS LSLSSPLIAP RTHHVAMLFH APPEKRFLEM PLLPAAKRSE VVAADEERAG  60
LRGGSDEEDG GCGIDGSRKK LRLSKDQSAV LEDSFREHPT LNPRQKATLA QQLGLRPRQV  120
EVWFQNRRAR TKLKQTEVDC EFLKRCCETL TEENRRLQKE VQELRALKLV SPHLYMNMSP  180
PTTLTMCPSC ERVSNTNNNS SSAADRRGIS TTTAAATGGS IDTAADGGIL CHRPIAVRPQ  240
QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682SRKKLRL
2126134RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220060.0AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634538.11e-141homeobox-leucine zipper protein HOX17
SwissprotQ01I231e-143HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A0E0KTJ11e-177A0A0E0KTJ1_ORYPU; Uncharacterized protein
STRINGOPUNC04G18440.11e-178(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.18e-72homeobox-leucine zipper protein 3