PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G18860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 686aa    MW: 71845.2 Da    PI: 6.0673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G18860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.98e-833296853374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +   ++ ts+ +++ +l+a+k fs++sP+l+f+++
  OPUNC04G18860.1 329 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAGTRLTSPLDVALKLTAYKSFSDLSPVLQFANF 417
                      7899*************************************************.....56666777777889********************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++   
  OPUNC04G18860.1 418 TATQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRCgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAI--- 508
                      ********999887799************************96544459*****************************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL   + +E++aV+l +   +          + +++L+lvk+l Pk+vv +++ +d+++ +F ++fl++l+ ++ l++sl+a  ++
  OPUNC04G18860.1 509 NLDAFDPMELIAPTaDEVVAVSLPVGCSTRT--------PLPAMLQLVKQLAPKIVVAIDHGSDRSDLPFSQHFLSCLQSCMCLLESLDAA-GT 593
                      999999999966557**********888876........5677*********************************************998.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      + ++++k+Er+l++++++++v  + ++      ++  Wr  l +aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W++ +LvsvS
  OPUNC04G18860.1 594 DVDAASKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLASAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVS 682
                      99*******************977665.....88899********************************************************* PP

             GRAS 372 aWr 374
                      aWr
  OPUNC04G18860.1 683 AWR 685
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.567301665IPR005202Transcription factor GRAS
PfamPF035142.8E-80329685IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MRAASFSADG NGAAELAGTI AALLWPEDKG GGGGGSLLVE PRSVLDCRGS PSPPNSTSTL  60
SSSHGSGAAD SISTGVAVVS ESSAAAAEAT RWAAPGEHGG GGGCELPPIP RALDVGFVAE  120
ESWDAMLGDA AAAAGQEQTF LNWIMATPGD MEPQAPGLSQ QQLLANASGF GFPLQHHPGG  180
VSSPAALASD LSSSGGRSLT SSSGSNSKAT STTAPFHDGA DIKPPLHGLP SPTLLFNQHQ  240
PTPASTLFMP LPSFSDHQQQ QPPPKRHHSV PDNLFLLHNQ PQPPPPAQCL PFPTLHSTAP  300
FQLQPSLQHP HNAMKTTAAA AAQQQHLLDE LAAAAKATEV GNSIGAREIL ARLNQQLPPI  360
GKPFLRSASY LKDALLLALA DGHHAGTRLT SPLDVALKLT AYKSFSDLSP VLQFANFTAT  420
QALLDEIAST TASCIRVIDF DLGVGGQWAS FLQELAHRCG SGGVSLPMLK LTAFVSAASH  480
HPLELHLTQD NLSQFAADLG IPFEFNAINL DAFDPMELIA PTADEVVAVS LPVGCSTRTP  540
LPAMLQLVKQ LAPKIVVAID HGSDRSDLPF SQHFLSCLQS CMCLLESLDA AGTDVDAASK  600
IERFLIQPRV EDAVLGRRRA DKAIAWRTVL ASAGFAPQPL SNLAEAQADC LLKRVQVRGF  660
HVEKRGAGLA LYWQRGELVS VSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-273276854375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066470.0AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA0A0E0KTP60.0A0A0E0KTP6_ORYPU; Uncharacterized protein
STRINGOPUNC04G18860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-89GRAS family protein