PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19030.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 537aa    MW: 59536.9 Da    PI: 4.7568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19030.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12372418354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h + ErrRR+++N+ f  L++llP+      +K++Ka++L +++ Y+k L
  OPUNC04G19030.2 372 KNHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASVLAETITYLKLL 418
                      5899***********************7.....6***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-4620197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.974369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-16372438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-14372423No hitNo description
Gene3DG3DSA:4.10.280.102.9E-15373430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10373418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MASAPLVQEE PLQPGTKHFR SQLAAAVRSI SWSYTIFWST STSLPGVLTW NDGFYNGEVK  60
TRKISNLEDL TADQLVLRRS EQLRELYYSL LSGECDHRAR KPVTSLSPED ISDTEWYYIV  120
CMTYAFRPGQ GLPGKSYASN GSVWLCDAES ADSKTFLRAL LAKTIVCIPF MSGVLELGTT  180
DPVLEDPNLV NRIVAYFKEL QFPICLEVLS SSPSPNETED EDIVFDGLII HNDIEEEQMV  240
ILQEEHELGD VVVVTECVTN ANLDTITMET DELFSLCEEL DLDLGSNQLV PTSAPETVAA  300
AAAAANDVDG VANSRASCFM SWKRANPDKV VVPITAGIES QKLLKKAVSG TEWISNDGRG  360
SVAITTQGSS IKNHVMSERR RREKLNEMFL ILKSLLPSVR KVDKASVLAE TITYLKLLEK  420
RVKELESSRE PSRWRPTEIG QRRRREITGK EVSEIGVSGG DVLLSQEGRA SNVNVTVRDK  480
VVLLEVQCRW KELVMTRVFD AIKSLCLDVL SVQASAPDGL LGLKIQAKVS RAVELPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-1751982193Transcription factor MYC3
4rqw_B3e-1751982193Transcription factor MYC3
4rs9_A3e-1751982193Transcription factor MYC3
4yz6_A3e-1751982193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377382ERRRRE
2378383RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
SwissprotP135261e-166ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0KTS00.0A0A0E0KTS0_ORYPU; Uncharacterized protein
STRINGOPUNC04G19030.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-69bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]