PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 654aa    MW: 71832.5 Da    PI: 4.9177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12467514355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+L+
  OPUNC04G19040.1 467 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 514
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-4897274IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859464513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-15467518No hitNo description
SuperFamilySSF474591.44E-17467536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17468524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10468514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-15470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MRLDSCLLVL RSTQSHYIAP SIFLCKHTHD TLVARSPPDR EFLVCERLQL REEFLFVLTR  60
RIVSTNQQQR VPISLIVAVS EFTVMEETPL PSGKNFRNQL AAAARSINWT YAIFWSISTS  120
RPGVLTWKDG FYNGEIKTRK ITNSRNLTAD ELVLQRSEQL RELYNSLLSG ECDHRARRPV  180
AALSPEDLGD TEWYYVVCMT YAFRPGQGLP GKSFASNEFV WLSNTQSAAR KLFHRALIAK  240
TIVCVPFMHG VLELGTTDPV SEDPALVDRI AASFWDTPSS VAFSSEAGDP DIAFEDLDHD  300
NAAVEATTMV PAEPPAVGGE VAECESNAND LEQITMDDIG ELYSLCEELD VVRPLDDDSS  360
SWVVDPWSSC QPVPTSSPAP EAPAGEATDV DDVVVTALDG SAIDGSCRSP SCFVAWKRTA  420
DSDEVTVPLT SGEPPQKLLK KAVAGAGAWM NNGDVSAAMT TQGSSIKNHV MSERRRREKL  480
NEMFLILKSV VPSIHKVDKA SILAETIAYL KELEKRVEEL ESSSQPSPRP IEPRRRRCCE  540
ITGKKVSAGA KRKASAPEVA SDDDTEGERH CLSNVNVTIM DKEVLLELQC QWKELLMTRV  600
FDAIKGVSLD VLSVQASTSH GLLGLKIQAK FASSAAVEPG MITEALRKAI AKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2210827423192Transcription factor MYC3
4rqw_B4e-2210827423192Transcription factor MYC3
4rru_A5e-2210827062227Transcription factor MYC3
4rs9_A4e-2210827423192Transcription factor MYC3
4ywc_A5e-2210827062227Transcription factor MYC3
4ywc_B5e-2210827062227Transcription factor MYC3
4yz6_A4e-2210827423192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472477ERRRRE
2473478RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU398600.0U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635227.10.0anthocyanin regulatory Lc protein isoform X4
SwissprotP135260.0ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0KTS10.0A0A0E0KTS1_ORYPU; Uncharacterized protein
STRINGOPUNC04G19040.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.35e-58bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]