PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19040.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 665aa    MW: 73017.9 Da    PI: 4.9659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19040.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12478525355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+L+
  OPUNC04G19040.2 478 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 525
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-48108285IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-15478529No hitNo description
SuperFamilySSF474591.57E-17478547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10479525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-17479535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-15481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MRLVNASLLQ FVGRDSCLLV LRSTQSHYIA PSIFLCKHTH DTLVARSPPD REFLVCERLQ  60
LREEFLFVLT RRIVSTNQQQ RVPISLIVAV SEFTVMEETP LPSGKNFRNQ LAAAARSINW  120
TYAIFWSIST SRPGVLTWKD GFYNGEIKTR KITNSRNLTA DELVLQRSEQ LRELYNSLLS  180
GECDHRARRP VAALSPEDLG DTEWYYVVCM TYAFRPGQGL PGKSFASNEF VWLSNTQSAA  240
RKLFHRALIA KTIVCVPFMH GVLELGTTDP VSEDPALVDR IAASFWDTPS SVAFSSEAGD  300
PDIAFEDLDH DNAAVEATTM VPAEPPAVGG EVAECESNAN DLEQITMDDI GELYSLCEEL  360
DVVRPLDDDS SSWVVDPWSS CQPVPTSSPA PEAPAGEATD VDDVVVTALD GSAIDGSCRS  420
PSCFVAWKRT ADSDEVTVPL TSGEPPQKLL KKAVAGAGAW MNNGDVSAAM TTQGSSIKNH  480
VMSERRRREK LNEMFLILKS VVPSIHKVDK ASILAETIAY LKELEKRVEE LESSSQPSPR  540
PIEPRRRRCC EITGKKVSAG AKRKASAPEV ASDDDTEGER HCLSNVNVTI MDKEVLLELQ  600
CQWKELLMTR VFDAIKGVSL DVLSVQASTS HGLLGLKIQA KFASSAAVEP GMITEALRKA  660
IAKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-2211928523192Transcription factor MYC3
4rqw_B5e-2211928523192Transcription factor MYC3
4rru_A5e-2211928162227Transcription factor MYC3
4rs9_A5e-2211928523192Transcription factor MYC3
4ywc_A5e-2211928162227Transcription factor MYC3
4ywc_B5e-2211928162227Transcription factor MYC3
4yz6_A5e-2211928523192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483488ERRRRE
2484489RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU398600.0U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635227.10.0anthocyanin regulatory Lc protein isoform X4
SwissprotP135260.0ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0KTS20.0A0A0E0KTS2_ORYPU; Uncharacterized protein
STRINGOPUNC04G19040.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.35e-58bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]