PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G19610.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 318aa MW: 35046.9 Da PI: 5.5779

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G19610.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00035	122	245	23	54
HHCTSCCC...................................................................................... CS HLH 23 LrellPkas..................................................................................... 31 L++l+P+++ OPUNC04G19610.2 122 LQQLIPTSFldhpgtigtervcpdgsaleasfcmrtsrdvgsfsgyrsatleelmstdtkeqeitrlarscssrgsdpnkkrrseervvgnank 215 6677777666777777777777777777777777777777777777777777777777777777777777778888888888888888888888 PP .........TTS-STCHHHHHHHHHHHHHH CS HLH 32 .......kapskKlsKaeiLekAveYIksL 54 +++s K + a++L +++ YIk L OPUNC04G19610.2 216 sksetahSTSSSKTDTASVLLETITYIKFL 245 888888899*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.1E-5	122	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.981	191	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.93E-4	201	250	No hit	No description
SuperFamily	SSF47459	4.32E-5	225	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-5	225	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MHNVFSSREE HVSNDNSFRE SLLSLLDNTR DDVMAPEVFE GVPVACDYLK EMDMGGDGDS 60 GEMAASAVAA YSLDSAGPHA GARSIEHGIA SSPLAYQLGK NSAVDQRIIQ QQEVGAHMAA 120 FLQQLIPTSF LDHPGTIGTE RVCPDGSALE ASFCMRTSRD VGSFSGYRSA TLEELMSTDT 180 KEQEITRLAR SCSSRGSDPN KKRRSEERVV GNANKSKSET AHSTSSSKTD TASVLLETIT 240 YIKFLHEQIQ LFSQPYMTNS TNKGHIHWGG EEKRKAGLEH DLRGRGLCLV PVSWTSQEYC 300 DSILPECWAP AYRNYFYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109094	1e-140	AK109094.1 Oryza sativa Japonica Group cDNA clone:002-155-A07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636877.1	1e-179	uncharacterized protein LOC4336685 isoform X3
TrEMBL	A0A0E0KU09	0.0	A0A0E0KU09_ORYPU; Uncharacterized protein
STRING	OPUNC04G19610.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-22	bHLH family protein