PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G20010.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 353aa    MW: 38521.7 Da    PI: 8.9535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G20010.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08125146325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +++C+ff+  G C+yGd+C++ H
  OPUNC04G20010.3 125 EKPCKFFLS-GDCRYGDQCRYLH 146
                      689**7777.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.16893IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.1936894IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788122149IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6124146IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6125146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-6126146IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.23E-13175311IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.9E-9175315IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MYENCSKIEK KNPNNPTIPT RHEPHAVVSY RRRRIARNQP ILLASTHVLR VRRGRPAGRH  60
GPTSPASSSA GKVCIHWRAG RCIRFPCHYL HSELPEAPPK RPSHRPSAAA GGGGGGNCVV  120
SSTREKPCKF FLSGDCRYGD QCRYLHAGAP STTASRCSPR SAAIRRSHQY RAGGRIWDTQ  180
TGAEMSLSEP TGRVHALAVG NGMLFAAIQV WDLATLQWTQ TLSGHTGAIM SLLCWDQFLL  240
SSSLDQTIKG ALALACMQDA QLNPILLCST NDNIVHLYEL PSFANRDKIS FEAEVGAVKN  300
GPGGLIFTGD EIGELKCGNG QLNELMESQT VEEYTSTGLE ELFADVGTWK KKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12033RHEPHAVVSYRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032541e-112AK103254.1 Oryza sativa Japonica Group cDNA clone:J033123O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627227.12e-69zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-70C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0E0KU620.0A0A0E0KU62_ORYPU; Uncharacterized protein
STRINGOPUNC04G20010.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-53zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]