PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G20010.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 364aa    MW: 39729 Da    PI: 8.3767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G20010.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08125146325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +++C+ff+  G C+yGd+C++ H
  OPUNC04G20010.4 125 EKPCKFFLS-GDCRYGDQCRYLH 146
                      689**7777.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.16893IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.1936894IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788122149IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6124146IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6125146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-6126146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.4E-16167330IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.2E-19170331IPR017986WD40-repeat-containing domain
PROSITE profilePS502949.81203256IPR017986WD40-repeat-containing domain
SMARTSM003200.0055210247IPR001680WD40 repeat
PROSITE profilePS500828.804217246IPR001680WD40 repeat
SMARTSM0032076251294IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYENCSKIEK KNPNNPTIPT RHEPHAVVSY RRRRIARNQP ILLASTHVLR VRRGRPAGRH  60
GPTSPASSSA GKVCIHWRAG RCIRFPCHYL HSELPEAPPK RPSHRPSAAA GGGGGGNCVV  120
SSTREKPCKF FLSGDCRYGD QCRYLHAGAP STTASRCSPR SAAIRSKDGT IWDTQTGAEM  180
SLSEPTGRVH ALAVGNGMLF AAIQVWDLAT LQWTQTLSGH TGAIMSLLCW DQFLLSSSLD  240
QTIKVWATME TGSPVVTYTH NEDDGALALA CMQDAQLNPI LLCSTNDNIV HLYELPSFAN  300
RDKISFEAEV GAVKNGPGGL IFTGDEIGEL KCGNGQLNEL MESQTGGLVY LEWRNRSADW  360
SLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12033RHEPHAVVSYRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032540.0AK103254.1 Oryza sativa Japonica Group cDNA clone:J033123O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627227.13e-84zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP53e-85C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0E0KU630.0A0A0E0KU63_ORYPU; Uncharacterized protein
STRINGOPUNC04G20010.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.12e-61C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]