PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G21550.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 281aa    MW: 30773 Da    PI: 8.0758
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G21550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-332579155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+
  OPUNC04G21550.1 25 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRV 79
                     79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1932282IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-322279IPR009057Homeodomain-like
SuperFamilySSF466893.94E-162579IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-242579IPR006447Myb domain, plants
PfamPF002491.5E-92778IPR001005SANT/Myb domain
PfamPF143791.6E-21124170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFEGTEGCYG GVGAASAAAS TRDPKPRLRW TPDLHERFVD AVTKLGGPDK ATPKSVLRLM  60
GMKGLTLYHL KSHLQKYRVG RANKKSAGLE LALADGSGFT AEGINFSMGA PPRNPAGGNN  120
TGEMPLADAL RYQVEVHRKL QEQLEVQKKL QMRIEAQGRY LKEILEKAQK NISLDANGSA  180
NLSSTRSQIT DINLALSGFM DDATQVHEEN NELVKAISDD NLKVNTLGFQ LYHVGNQESK  240
DVKCTPKTED LLLLDLNIKG GYELSSRGMQ GCELDLKMIN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-222581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-222581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-222581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-222581157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064000.0AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635409.11e-180myb family transcription factor PHL11 isoform X2
TrEMBLA0A0E0KUQ40.0A0A0E0KUQ4_ORYPU; Uncharacterized protein
STRINGOPUNC04G21550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-56G2-like family protein