PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G23630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 784aa    MW: 85491.7 Da    PI: 5.6189
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G23630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2099155157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  OPUNC04G23630.1  99 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 155
                      688999************************************************995 PP
2START204.54.4e-642995251206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT- CS
            START   1 elaeeaaqelvkkalaeepgWvkss..........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetl 76 
                      ela +a++elv++a+++ep+W+  +          e +n +e+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d ++    +++ +
  OPUNC04G23630.1 299 ELAVAAMEELVRMAQLDEPLWSVAPldavaaaaamETLNDEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIV 392
                      57899******************************************998889*******************************6666666666 PP

                      SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
            START  77 akaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                       +a tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+sk
  OPUNC04G23630.1 393 SRAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSK 482
                      6*****************************************************************98....7********************* PP

                      EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      vtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  OPUNC04G23630.1 483 VTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 525
                      *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2279154IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2086156IPR009057Homeodomain-like
PROSITE profilePS5007117.0796156IPR001356Homeobox domain
SMARTSM003892.3E-2097160IPR001356Homeobox domain
CDDcd000861.35E-1998157No hitNo description
PfamPF000466.4E-1899154IPR001356Homeobox domain
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084841.854290528IPR002913START domain
SuperFamilySSF559611.24E-34292527No hitNo description
CDDcd088752.61E-121294524No hitNo description
SMARTSM002341.0E-58299525IPR002913START domain
PfamPF018525.6E-54300525IPR002913START domain
Gene3DG3DSA:3.30.530.205.0E-6366521IPR023393START-like domain
SuperFamilySSF559611.44E-23546774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MERREIFQVA DLAHILREKP VDHLQQPNLL DNHQFQQAFH QQQHHLLDQI PATTAESGDN  60
MIRGRASDPL GDEFESKSGS ENVDGVSVDD QDPNQRPRKK RYHRHTQHQI QEMEAFFKEC  120
PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKNQHERH ENSQLRSDNE KLRAENMRYK  180
EALSSASCPN CGGPAALGEM SFDEHHLRIE NARLREEIDR ISAIAAKYVG KPMVPFPVLS  240
NPMAAAAAAS RAAGAPLDLP VVPYGAGVVP GDMFGGGGAS AGELLRGVQS EVDKPMIVEL  300
AVAAMEELVR MAQLDEPLWS VAPLDAVAAA AAMETLNDEE YARMFPRGLG PKQYGLRSEA  360
SRDSAVVIMT HANLVEILMD ANQYAAVFSN IVSRAVTLEV LSTGVAGNYN GALQVMSVEF  420
QVPSPLVPTR ESYFVRYCKQ NADGTWAVVD VSLDSLRPSP VLKCRRRPSG CLIQEMPNGY  480
SKVTWVEHVE VDDRSVHNIY KLLVNSGLAF GARRWVGTLD RQCERLASVM ASNIPTSDIG  540
VITSTEGRKS MLKLAERMVV SFCGGVTASV AHQWTTLSGS GAEDVRVMTR KSVDDPGRPP  600
GIVLNAATSF WLPVPPKRVF DFLRDESSRS EWDILSNGGI VQEMAHIANG RDQGNCVSLL  660
RVNSSNSNQS NMLILQESCT DASGSYVIYA PVDVVAMNVV LNGGDPDYVA LLPSGFAILP  720
DGPAHDGGDG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVSGE  780
SNPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016450.0AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636340.10.0homeobox-leucine zipper protein ROC2 isoform X2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A0E0KVJ10.0A0A0E0KVJ1_ORYPU; Uncharacterized protein
STRINGOPUNC04G23630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]