PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G23980.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 442aa    MW: 46113.6 Da    PI: 7.3676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G23980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053343711254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  OPUNC04G23980.1 334 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 371
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11332385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-5332375No hitNo description
Gene3DG3DSA:4.10.280.104.2E-8332380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG GGGGGGGSSH GVWWNSAVAM PAATCSTTEL TGYTAWSSAL  60
AAGYDGMVAD NGGGGKQAKS TTTASSESPG NNSSITFQEP ASIPDPTAVA AVPQPALAGF  120
TDWTQPFMNN GAGLHEFLQD GHHDMSASSL MNHSSNNLAL QQAGHHHEQA DHHHQLLSSF  180
GSDLLLSPTS PYGFQSSLLR SLMEPTAAAP AAKQPALAGL QQYQYQQQMG HTPAAAAKFT  240
PAVGARDSLQ CTNEAPFWNL SAGFGMAAAA AAQEQASVRS AKRSSPAPPR AGTLAVKTAL  300
EGVGDSSSVI TKKEPAFKKP RLETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV  360
LHETIEYIKF LHDQVGALSA PYLKNGAHQV PHLKNSSPDK SKHSEISLKG RGLCLVPISS  420
TFAVASEVPV ELWTPFGANF IR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327010.0CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0E0KVN30.0A0A0E0KVN3_ORYPU; Uncharacterized protein
STRINGOPUNC04G23980.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-49bHLH family protein