PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G26220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 308aa    MW: 31711.6 Da    PI: 9.8875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G26220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08105130227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +     Ck+Gd+C+FaHg+
  OPUNC04G26220.1 105 KTRMCTKYNTAEGCKFGDKCHFAHGE 130
                      9***********************96 PP
2zf-CCCH38.12.6e-12275300127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC +f + GtC +GdrC+FaHg+
  OPUNC04G26220.1 275 YKTKLCENFVK-GTCTFGDRCHFAHGE 300
                      9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.63764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5963765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.384562No hitNo description
SMARTSM003560.046103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8104134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-13105135IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.86E-14169244IPR004088K Homology domain, type 1
SMARTSM003228.9E-11173243IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.9E-15173243IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257174238IPR004088K Homology domain, type 1
CDDcd001059.14E-14176238No hitNo description
PfamPF000131.5E-10176238IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.9E-15273304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-9273304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488274301IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8274300IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10275300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGAGAARKR SRPDTANGGA AGGKRSRETE SFQTGLSSKS KPCTKFFSTV GCPFGEGCHF  60
SHFVPGGYQA VAKTLNLGNP AVPAPARAPM DHAAGGNSHS ASSGKTRMCT KYNTAEGCKF  120
GDKCHFAHGE RELGKPAYMS HESAMAPMGG RYGSRPEPPP PAAMGPPAGN FGASATAKIS  180
VDASLAGGII GKGGVNTKQI CRVTGVKLSI RDHESDPNLK NIELEGNFDQ IKQASNMVGE  240
LIATISASTP TKKPAGSAAG AAPAGRGGPG GRNNYKTKLC ENFVKGTCTF GDRCHFAHGE  300
NEQRKGAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8338350.0CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692062.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-180C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLG9C2V00.0G9C2V0_ORYPU; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGOPUNC04G26220.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]