PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G26220.4

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 284aa MW: 29089.9 Da PI: 10.3664

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G26220.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.2e-08	81	106	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ OPUNC04G26220.4 81 KTRMCTKYNTAEGCKFGDKCHFAHGE 106 9***********************96 PP
2	zf-CCCH	38.2	2.4e-12	251	276	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +GdrC+FaHg+ OPUNC04G26220.4 251 YKTKLCENFVK-GTCTFGDRCHFAHGE 276 9********.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.892	79	107	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.046	79	106	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-8	80	110	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-13	81	111	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-5	81	106	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF54791	4.1E-14	145	220	IPR004088	K Homology domain, type 1
SMART	SM00322	8.9E-11	149	219	IPR004087	K Homology domain
Gene3D	G3DSA:3.30.1370.10	6.8E-15	149	219	IPR004088	K Homology domain, type 1
PROSITE profile	PS50084	14.257	150	214	IPR004088	K Homology domain, type 1
Pfam	PF00013	1.3E-10	152	214	IPR004088	K Homology domain, type 1
CDD	cd00105	1.53E-13	152	214	No hit	No description
Gene3D	G3DSA:4.10.1000.10	6.2E-15	249	280	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-9	249	280	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.488	250	277	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-8	250	276	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-10	251	276	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEGAGAARKR SRPDTANGGA AGGKRSRALS DALLVRAVIS RTLSLVVAKT LNLGNPAVPA 60 PARAPMDHAA GGNSHSASSG KTRMCTKYNT AEGCKFGDKC HFAHGERELG KPAYMSHESA 120 MAPMGGRYGS RPEPPPPAAM GPPAGNFGAS ATAKISVDAS LAGGIIGKGG VNTKQICRVT 180 GVKLSIRDHE SDPNLKNIEL EGNFDQIKQA SNMVGELIAT ISASTPTKKP AGSAAGAAPA 240 GRGGPGGRNN YKTKLCENFV KGTCTFGDRC HFAHGENEQR KGAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ827834	0.0	HQ827834.1 Oryza punctata isolate BB Shattering4 gene locus, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692062.1	1e-146	PREDICTED: zinc finger CCCH domain-containing protein 31
Swissprot	Q7XPK1	1e-140	C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBL	A0A0E0KWF9	0.0	A0A0E0KWF9_ORYPU; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRING	OPUNC04G26220.2	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	3e-52	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]