PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G27290.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 212aa MW: 22365.7 Da PI: 7.2072

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G27290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.9	6.9e-36	54	109	2	57
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 k+++l+cprC stntkfCyynnys+sqPr+fC+aCrryWt+GG+lr+vPvGg++r+ OPUNC04G27290.1 54 KKQQLECPRCRSTNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPVGGASRR 109 6899*************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.4E-32	56	109	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	58	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.736	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAPAVASSPS VVLSAAATAS NKRPADSDAV PLTDSSPPPQ GDQEVSPRTG QQEKKQQLEC 60 PRCRSTNTKF CYYNNYSTSQ PRHFCRACRR YWTHGGTLRD VPVGGASRRG GGKRRRVSAD 120 ADPSSASPPP TTSTDAYAEL PAGFPFLSDG AFLPSFGLAG VAPAAFSWQS AIPDLYNCGL 180 APWDDGTAVT GAAWDNFTDI AGLDLSWPPP GN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107524	0.0	AK107524.1 Oryza sativa Japonica Group cDNA clone:002-129-F12, full insert sequence.
GenBank	AL606668	0.0	AL606668.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence.
GenBank	AL732349	0.0	AL732349.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence.
GenBank	AL732353	0.0	AL732353.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	AY461803	0.0	AY461803.1 Oryza sativa (japonica cultivar-group) Dof28 mRNA, complete cds.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448779.1	4e-67	dof zinc finger protein DOF5.8
TrEMBL	A0A0E0KWV1	1e-151	A0A0E0KWV1_ORYPU; Uncharacterized protein
STRING	OPUNC04G27290.1	1e-152	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-27	Dof family protein