PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G28140.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 517aa    MW: 56325.3 Da    PI: 8.8187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G28140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-06240262223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +CpdCg+ F r+++L+ H+   H
  OPUNC04G28140.1 240 SCPDCGEIFVRPDSLHLHQAIrH 262
                      8******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280239262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951239267IPR007087Zinc finger, C2H2
SuperFamilySSF563992.97E-19320516No hitNo description
Gene3DG3DSA:3.90.228.103.1E-9323516IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVEPGARETK ITGSASSSAG SDAGVMKKKK KKTTTKLVVA GRKVDEKDKK QLDYKCRSSS  60
GGDEWCKVES RHQCTEPESP SYRLALRSLF SCRNSSHAGH HRAPDCKKLG CNSAASICKV  120
KQDNLMHTRR PEEELKVKDK PPLAEPYCKR RASVSACNIS SERSVKKSVK QQEAQASSCL  180
LSSASASSSS STAGGGGGSF RGMQQLSLRR LSGCYECHMV VDPISGVFRD SSSMRATICS  240
CPDCGEIFVR PDSLHLHQAI RHAGHYTAKL NCILHALCTR VMVWCALSFP DYHDEMRSTS  300
IYPCKLLHKS SCGGPVVPGV SELGAEDTSR NIISIIFQSS WLKKQSPVCA IDRILKVHNA  360
ARTLARFDDY RDAVKAKAHR HLHPRCTADG NELLRFHCAT LSCDLGLHGA THLCDHHSCA  420
ACSVIRHGFR PPTPGAGIRT MATSGRAHDA VVSEGDRRAM LVCRVIAGRV RREEPAAPED  480
EYDSVAGTAP GLYSNLDDLD VFNPTAILPC FVVVYRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066370.0AL606637.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.10.0uncharacterized protein LOC4337494
TrEMBLA0A0E0KX680.0A0A0E0KX68_ORYPU; Uncharacterized protein
STRINGOPUNC04G28140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-70C2H2-like zinc finger protein