PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G28180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 568aa    MW: 61936.9 Da    PI: 6.5987
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G28180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.3e-24117218299
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       k+lt+sd+++ g +++p+ +a+++       + ++ +   lt+ d++g sWe+++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+     
  OPUNC04G28180.1 117 AKQLTQSDANNGGGFSVPRLCADHIfpalnfeDDPPVQ--SLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTVVFMC-CPP 207
                      69*******************9777*****97666666..5************************************************5.449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+v+v+r+
  OPUNC04G28180.1 208 DGKLLVGVRRA 218
                      99*******97 PP
2Auxin_resp45.14.4e-16241314172
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpv 72 
                      a++ a+++ +F+v+Y+Pr ++ eFvv++ +v k l++++  Gm+++++ +e ed ++  +  Gt   v++ +  
  OPUNC04G28180.1 241 AVRLAAEQAPFTVTYYPRHGAGEFVVPRVEVDKGLTTPLRSGMQVRVQvMEAEDTRRLAWlNGTLKYVHHQQIW 314
                      6778999***************************************9758**********9***9999986553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-28107230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-30107228IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-18114217No hitNo description
PROSITE profilePS5086312.055116219IPR003340B3 DNA binding domain
SMARTSM010191.6E-13116219IPR003340B3 DNA binding domain
PfamPF023626.7E-21117218IPR003340B3 DNA binding domain
PfamPF065072.4E-11241314IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MARPPAATPP PPPVDRLVWL ACAAPLSRIP VVGTQVFYFP DGHAEQCPAP LPDPLPSAHR  60
FFLCTITAVH LAADTATGEP YATISLLPLR HDAPAPAPAA ELAESSEAQA QEFHYYAKQL  120
TQSDANNGGG FSVPRLCADH IFPALNFEDD PPVQSLTMGD LQGDSWEFRH IYRGTPRRHL  180
LTTGWSKFVN AKLLVAGDTV VFMCCPPDGK LLVGVRRAPR YSGDSPCNAR ARVQPQEVME  240
AVRLAAEQAP FTVTYYPRHG AGEFVVPRVE VDKGLTTPLR SGMQVRVQVM EAEDTRRLAW  300
LNGTLKYVHH QQIWRTLEVD WDASAASSSS MKNRFVNPWQ VQTVDFPPIP MGLKISNNSI  360
TAPMDNGDSL LVPPMLLHPQ PPAAIQGARH NNGHAYADTP SSLTPSMVRT QQLFPRDLQI  420
LVPPTDIVNP QNGSPSNNSL NTPPSASDGM KTIQLFGVTI TSPVQGDTNA AFSSAQVNQR  480
YNMAGPDLFQ HFGEGDASQP EIERHVQTIE QSILVGNEGK QDDIATHHPP QLATKAERDA  540
TINSNSNRVY TVPAASCLNK LQSRSQAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-531634221353Auxin response factor 1
4ldy_B5e-531634221353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094490.0AK109449.1 Oryza sativa Japonica Group cDNA clone:001-113-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634416.10.0auxin response factor 13
SwissprotQ7XSS90.0ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A0E0KX750.0A0A0E0KX75_ORYPU; Auxin response factor
STRINGOPUNC04G28180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.16e-76auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]