PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G01460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 303aa    MW: 34693.6 Da    PI: 8.642
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G01460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-063155123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     ++C+   C+ s+srk++L+rH+ tH
  OPUNC05G01460.1 31 FSCHvdGCPFSYSRKDHLNRHLLTH 55
                     89*********************99 PP
2zf-C2H213.40.000226085123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                     + Cp   C++ F+ k n++rH +  H
  OPUNC05G01460.1 60 FACPveGCNRKFTIKGNMQRHVQEmH 85
                     78*******************99877 PP
3zf-C2H221.27.8e-0797121123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  OPUNC05G01460.1  97 FICPeeNCGKTFKYASKLQKHEESH 121
                      78*******************9988 PP
4zf-C2H217.21.4e-05188212223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  OPUNC05G01460.1 188 RCHfkDCKLSFSKKSNLDKHVKAvH 212
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-92857IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-62857No hitNo description
SMARTSM003550.00163155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3493160IPR007087Zinc finger, C2H2
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-65886No hitNo description
Gene3DG3DSA:3.30.160.607.1E-85886IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.8E-46085IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876090IPR007087Zinc finger, C2H2
PROSITE patternPS0002806285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-793121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.57E-594123No hitNo description
SMARTSM003550.001897121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2497121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099121IPR007087Zinc finger, C2H2
SMARTSM0035512129154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131154IPR007087Zinc finger, C2H2
SMARTSM0035513157178IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.72E-7168229No hitNo description
Gene3DG3DSA:3.30.160.604.8E-5168209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016187212IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.071187217IPR007087Zinc finger, C2H2
PROSITE patternPS000280189212IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-6211240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974218249IPR007087Zinc finger, C2H2
SMARTSM003553.5218244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MALNGLVSGW GDSPEKLHQE CLVHTLFQRP FSCHVDGCPF SYSRKDHLNR HLLTHQGKLF  60
ACPVEGCNRK FTIKGNMQRH VQEMHKDGSP CESKKEFICP EENCGKTFKY ASKLQKHEES  120
HVKLDYSEVI CCEPGCMKAF TNLECLKAHN ESCHRHVVCD VCGTKQLKKN FKRHQRMHEG  180
SCVTERIRCH FKDCKLSFSK KSNLDKHVKA VHEQKRPFVC GFSGCGKSFS YKHVRDNHEK  240
SSAHVYVQAN FEEIDGERPR QAGGRKRKAI PVDSLMRKRV AAPDDDSPAC DDGTEYLRWL  300
LSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-142814940155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-142814940155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
RefseqXP_015637661.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ43e-88TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0E0KXX00.0A0A0E0KXX0_ORYPU; Uncharacterized protein
STRINGOBART05G01510.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-90transcription factor IIIA