PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G01460.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 454aa    MW: 51028.9 Da    PI: 8.4914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G01460.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06156176323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ Cg sF+ + +Lk+H+++H
  OPUNC05G01460.3 156 CKVCGASFKKPAHLKQHMQSH 176
                      *******************99 PP
2zf-C2H219.42.9e-06182206123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  OPUNC05G01460.3 182 FSCHvdGCPFSYSRKDHLNRHLLTH 206
                      89*********************99 PP
3zf-C2H212.70.00037211236123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n++rH +  H
  OPUNC05G01460.3 211 FACPveGCNRKFTIKGNMQRHVQEmH 236
                      78*******************99877 PP
4zf-C2H220.51.3e-06248272123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  OPUNC05G01460.3 248 FICPeeNCGKTFKYASKLQKHEESH 272
                      78*******************9988 PP
5zf-C2H216.52.4e-05339363223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  OPUNC05G01460.3 339 RCHfkDCKLSFSKKSNLDKHVKAvH 363
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035515107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.235154181IPR007087Zinc finger, C2H2
SMARTSM003550.01154176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-5156172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128742.4E-4156176No hitNo description
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SuperFamilySSF576678.39E-11166208No hitNo description
Gene3DG3DSA:3.30.160.603.7E-13173208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.349182211IPR007087Zinc finger, C2H2
SMARTSM003550.0016182206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280184206IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-7192242No hitNo description
Gene3DG3DSA:3.30.160.601.2E-7209237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887211241IPR007087Zinc finger, C2H2
SMARTSM003553.8E-4211236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-7244272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.72E-5245274No hitNo description
PROSITE profilePS5015711.24248272IPR007087Zinc finger, C2H2
SMARTSM003550.0018248272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250272IPR007087Zinc finger, C2H2
SMARTSM0035512280305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280282305IPR007087Zinc finger, C2H2
SMARTSM0035513308329IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.27E-7319380No hitNo description
Gene3DG3DSA:3.30.160.606.3E-5319360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.071338368IPR007087Zinc finger, C2H2
SMARTSM003550.016338363IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280340363IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-6362391IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.5369395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974369400IPR007087Zinc finger, C2H2
PROSITE patternPS000280371395IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MANGGGTVEG EDEGTRAGLR WYPNPAPAFS NPNPLRLAYS ATATTAWFES RCAAVANIWS  60
LAEPLIQRIP LQLEMGSVEL GTEEGEVAGG EGESKGAAPP ARDIRRYKCD FCSVVRSKKG  120
LIRAHVLEHH KDEVDDLDDY FGRGGGKSHK GIDRDCKVCG ASFKKPAHLK QHMQSHSLER  180
PFSCHVDGCP FSYSRKDHLN RHLLTHQGKL FACPVEGCNR KFTIKGNMQR HVQEMHKDGS  240
PCESKKEFIC PEENCGKTFK YASKLQKHEE SHVKLDYSEV ICCEPGCMKA FTNLECLKAH  300
NESCHRHVVC DVCGTKQLKK NFKRHQRMHE GSCVTERIRC HFKDCKLSFS KKSNLDKHVK  360
AVHEQKRPFV CGFSGCGKSF SYKHVRDNHE KSSAHVYVQA NFEEIDGERP RQAGGRKRKA  420
IPVDSLMRKR VAAPDDDSPA CDDGTEYLRW LLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-1815930020155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-1815930020155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995280.0AK099528.1 Oryza sativa Japonica Group cDNA clone:J013031H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-111TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0E0KXX20.0A0A0E0KXX2_ORYPU; Uncharacterized protein
STRINGOPUNC05G01460.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-111transcription factor IIIA