PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G01460.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 218aa    MW: 23714.9 Da    PI: 7.2365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G01460.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07156176323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ Cg sF+ + +Lk+H+++H
  OPUNC05G01460.4 156 CKVCGASFKKPAHLKQHMQSH 176
                      *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035515107129IPR015880Zinc finger, C2H2-like
SMARTSM003550.01154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.05154181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-6156185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-6156185No hitNo description
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
PfamPF128749.5E-5156176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MANGGGTVEG EDEGTRAGLR WYPNPAPAFS NPNPLRLAYS ATATTAWFES RCAAVANIWS  60
LAEPLIQRIP LQLEMGSVEL GTEEGEVAGG EGESKGAAPP ARDIRRYKCD FCSVVRSKKG  120
LIRAHVLEHH KDEVDDLDDY FGRGGGKSHK GIDRDCKVCG ASFKKPAHLK QHMQSHSLER  180
TPKCEKALSG LVPGWGDPSG KLLQECLFHT LLQTIVHI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995281e-179AK099528.1 Oryza sativa Japonica Group cDNA clone:J013031H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.12e-59transcription factor IIIA isoform X1
TrEMBLA0A0E0KXX31e-161A0A0E0KXX3_ORYPU; Uncharacterized protein
STRINGOPUNC05G01460.31e-128(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-17transcription factor IIIA