PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G01610.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 109aa MW: 11523.4 Da PI: 9.0887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G01610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.2	1.9e-21	59	107	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll+a OPUNC05G01610.1 59 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQAS 107 7*********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.389	58	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-20	59	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MATNPLNSPN PASISYKLSL ELIKMGSSSD TACTVATAPP SPTPTSPPLA GQTTVVLSPC 60 AACKILRRRC VDRCVLAPYF PPTEPHKFTT AHRVFGASNI IKLLQASND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	58	104	10	56	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	58	104	10	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	1e-111	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	4e-36	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-28	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0E0KXZ2	2e-72	A0A0E0KXZ2_ORYPU; Uncharacterized protein
STRING	OPUNC05G01610.1	3e-73	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-30	LOB domain-containing protein 11