PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G01700.4

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 179aa MW: 20465.5 Da PI: 7.9856

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G01700.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.8	5.1e-10	112	145	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ OPUNC05G01700.4 112 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 145 69*****************************885 PP
2	ELK	34.1	5.9e-12	65	86	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ OPUNC05G01700.4 65 ELKEMLLKKYSGCLSRLRSEFL 86 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51213	10.423	65	85	IPR005539	ELK domain
SMART	SM01188	3.6E-6	65	86	IPR005539	ELK domain
Pfam	PF03789	6.9E-9	65	86	IPR005539	ELK domain
PROSITE profile	PS50071	12.681	85	148	IPR001356	Homeobox domain
SMART	SM00389	2.5E-14	87	152	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-20	87	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-27	90	150	IPR009057	Homeodomain-like
CDD	cd00086	6.63E-14	97	149	No hit	No description
Pfam	PF05920	2.2E-17	105	144	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	123	146	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MVNVVLLPHH LSLMSYMTFC LKLSLICNIS MQDEMVGSSE DEPCSGDADA ADFGQEHSSR 60 LADHELKEML LKKYSGCLSR LRSEFLKKRK KGKLPKDARS ALMDWWNTHY RWPYPTEEDK 120 VRLAAMTGLD PKQINNWFIN QRKRHWKPSE DMRFALMEGV TGGSSSGTTL YFDTGTIGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	89	LRSEFLKKRK
2	86	90	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:10488233}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007624	0.0	AB007624.1 Oryza sativa Japonica Group HOS9 mRNA, partial cds.
GenBank	AB028885	0.0	AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds.
GenBank	AF050180	0.0	AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds.
GenBank	AK111878	0.0	AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637898.1	1e-106	homeobox protein knotted-1-like 10
Swissprot	A2Y007	1e-107	KNOSA_ORYSI; Homeobox protein knotted-1-like 10
Swissprot	Q7GDL5	1e-107	KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBL	A0A0E0KY08	1e-132	A0A0E0KY08_ORYPU; Uncharacterized protein
STRING	OPUNC05G01700.4	1e-133	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.2	2e-40	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012] Xu Y, et al. OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice. Plant J., 2015. 83(5): p. 806-17 [PMID:26121094] Kir G, et al. RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture. Plant Physiol., 2015. 169(1): p. 826-39 [PMID:26162429]