PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G02190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 318aa    MW: 34646.7 Da    PI: 5.5531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G02190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-193683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  OPUNC05G02190.1 36 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 83
                     89********************************************97 PP
2Myb_DNA-binding513.3e-1689132146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  OPUNC05G02190.1  89 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 132
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1993183IPR017930Myb domain
SuperFamilySSF466894.69E-3134130IPR009057Homeodomain-like
SMARTSM007171.5E-153585IPR001005SANT/Myb domain
PfamPF002496.5E-173683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-233790IPR009057Homeodomain-like
CDDcd001671.37E-113883No hitNo description
PROSITE profilePS5129422.52784138IPR017930Myb domain
SMARTSM007174.2E-1488136IPR001005SANT/Myb domain
PfamPF002491.4E-1489132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2291137IPR009057Homeodomain-like
CDDcd001673.02E-1093132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDLEMEMMGM AMSPAMSSAT AAAAAAASED EGDLRRGPWT VEEDMLLVDY IANHGEGRWN  60
SLARCAGLRR TGKSCRLRWL NYLRPDVRRG NITADEQLLI LDLHSRWGNR WSKIAQYLPG  120
RTDNEIKNYW RTRVQKHAKQ LRCDVNSKEF RDVVRHVWMP RLVERIQADA AAATAGDVAA  180
PPAVTATRSM SSPAGAMYLH HQQIPPAAAM APAASSELYR HHGGGGDTSC SEPSQVAVTM  240
SPDDASSTLR SSSSAGGTAA AAAENDHTIH GDVLSGSWSE LLATTTTAAT AGLPDFDELG  300
DFEDNLWSLE DIWLHQQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-253313024120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-131CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638460.11e-172transcription factor MYB2-like
TrEMBLA0A0E0KY620.0A0A0E0KY62_ORYPU; Uncharacterized protein
STRINGOPUNC05G02190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-79myb domain protein 112