PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G04080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 277aa    MW: 30361.2 Da    PI: 9.4706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G04080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-1172116554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  OPUNC05G04080.1  72 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 116
                      9*************************.....67*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.40567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1271127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1171125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-972116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1073122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.47E-6153209No hitNo description
Gene3DG3DSA:3.30.70.2603.7E-6153210No hitNo description
PROSITE profilePS5167110.348156236IPR002912ACT domain
CDDcd048731.49E-6158193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAACQQQTWQ EGKQQQQQHL HHGGYDDLSS VYRGTVVLPR RQGGLAPEQP PPPPSSSSGR  60
STAAQATAMR IHSEAERRRR ERINAHLATL RRILPDAKQM DKATLLASVV NQVKHLKTRA  120
TESSTQSTAT IPPEANEVTV QCYAGGEHTH THTYIRATVS CDDRPGLLAD IAGAFRRLRL  180
RPLSADMSCI GGRTRHAFVL CREEEEAAAA AAEARPLKEA VRQALAKVAL PETVYGGGGG  240
GSGRSKRQRL MMESCYSTAV VHTHMDPPQY CWCSSRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106190.0AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.11e-142putative transcription factor bHLH107
RefseqXP_015638378.11e-142putative transcription factor bHLH107
RefseqXP_015638379.11e-142putative transcription factor bHLH107
TrEMBLA0A0E0KYW60.0A0A0E0KYW6_ORYPU; Uncharacterized protein
STRINGOPUNC05G04080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-24bHLH family protein