PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G04180.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 224aa MW: 22833 Da PI: 9.0299

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G04180.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.7e-40	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ael OPUNC05G04180.1 31 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAEL 124 7******************************************************************************************* PP DUF260 95 allkee 100 a++++e OPUNC05G04180.1 125 AAVRAE 130 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.35	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-40	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MMARRSCSMP AAAAGAGPGS AAAAAVNTIT PCAACKLLRR RCAQECPFSP YFSPLEPHKF 60 ASVHKVFGAS NVSKMLLEVH ESQRGDAANS LVYEANLRLR DPVYGCMGAI LTLQQQVQAL 120 EAELAAVRAE IVKHKYRPAS AAAAASATAA TVLPSSHASQ LLAAAGRGRL PVAGTMGVVT 180 TATLPAAAAA ASSSSSSTVY AAAAAASSST DYSSITNENV PYFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	31	134	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	31	134	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-137	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167556.1	1e-107	LOB domain-containing protein 15-like
Refseq	XP_025881485.1	1e-107	LOB domain-containing protein 15 isoform X1
Swissprot	Q9AT61	1e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0E0KYY0	1e-157	A0A0E0KYY0_ORYPU; Uncharacterized protein
STRING	OPUNC05G04180.1	1e-158	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-58	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]