PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G05190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 192aa    MW: 21280.6 Da    PI: 6.1243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G05190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-3094152159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh 
  OPUNC05G05190.1  94 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 152
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3282154IPR003657WRKY domain
SuperFamilySSF1182901.7E-2786154IPR003657WRKY domain
PROSITE profilePS5081131.42289154IPR003657WRKY domain
SMARTSM007742.5E-3494153IPR003657WRKY domain
PfamPF031062.8E-2395151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAASVGLNPE AFFNSSYSSP FMASYTPEFS AIVDAEFFGE LDIDYSLPAS AFAGAREEYL  60
DNENTMMRCE SEEKMRARVN GRIGFRTRSE VEILDDGFKW RKYGKKAVKN SPNPRNYYRC  120
STEGCNVKKR VERDREDHRY VITTYDGVHN HASPAATAAA LHYAGAGDYY SPPLSSAGSP  180
PATYSAGGSL LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2780155378Probable WRKY transcription factor 4
2lex_A9e-2780155378Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4062161e-179CU406216.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D08, full insert sequence.
GenBankCU4062181e-179CU406218.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654120.17e-95PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A0E0KZ981e-140A0A0E0KZ98_ORYPU; Uncharacterized protein
STRINGOPUNC05G05190.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-40WRKY DNA-binding protein 50