PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G05910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 392aa    MW: 42162.6 Da    PI: 7.9114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G05910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11225270454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  OPUNC05G05910.1 225 QHVLSERKRREKLNESFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 270
                      58889*********************9.....9**************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-16219287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-12223275No hitNo description
Gene3DG3DSA:4.10.280.107.1E-15225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9225270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDGGSWMLKA AATAADMHGG AGDTMIRCSW SDMATMTELP HQEQEPMTTT TMMMNSQAMQ  60
QQLSQANFIY MLMDMEEPDQ YATDVAPSPP SPSSSSFRSF SAATTTTSRD DNSSLMLAAA  120
AAASCHHQTE VSSQIILPPP GQASRWSGGA TAFRPYSRYL RRPGATTTTG GGGGQRAFKK  180
AISVLSKIHT ARLAQYYQIM EMAAVRASPA ATGGGGDSNQ QLQVQHVLSE RKRREKLNES  240
FKALRDVLPP ATKKDKASVL MRAKDYVNVL KARIAELEEK NRKLAESQVN AGDGEQDDDK  300
PDDEIEVNIG RSAAEDGIPA DKCQELHLKI MLGSSSRCSA MDAVAGILQG LNEKRDVSLL  360
ATGNASSSGG RLLPRAKCSQ QPAVRLQLKG VF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234ERKRRE
2230235RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.11e-155transcription factor PIF1
TrEMBLA0A0E0KZJ30.0A0A0E0KZJ3_ORYPU; Uncharacterized protein
STRINGOPUNC05G05910.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-17bHLH family protein