PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G06230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 337aa    MW: 35280 Da    PI: 4.8107
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G06230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-05442537
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ +e  e++  C  ++  lC+ C    H        H
  OPUNC05G06230.1  4 LCSACEAAEASVLCCADEAALCARCDRDVHAAnrlagkH 42
                     7******99*****************9999544455555 PP
2zf-B_box31.34.3e-1065105337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  OPUNC05G06230.1  65 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 105
                      789******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.31147IPR000315B-box-type zinc finger
SMARTSM003367.7E-8147IPR000315B-box-type zinc finger
CDDcd000212.28E-5347No hitNo description
SuperFamilySSF578456.41E-560103No hitNo description
SMARTSM003361.4E-1563110IPR000315B-box-type zinc finger
PfamPF006431.2E-86597IPR000315B-box-type zinc finger
CDDcd000215.69E-967110No hitNo description
PROSITE profilePS501199.54268110IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKVLCSACEA AEASVLCCAD EAALCARCDR DVHAANRLAG KHLRLPLLAP GSSASAAPAP  60
PPPSPPKCDI CQESHAYFFC LEDRALLCRS CDVAVHTANA FVSAHRRFLL TGVQVGQEQD  120
EHSPDPPEPS PPPPPPPPAK SDPAPLYDDG GGGFSWDAAD TPAAGGLPDW SVVNDQFGSS  180
APPRHADTAN VTTTPPPPPT KRSPRAPSFG GQGGMMDWPL GEFFGGFTDF TGGFGFGDTG  240
TSKADSGKLG GSTDGSPYYR SSSEEDRNAD ELFGQVPEIQ WSVPELPSPP TASGLHWQRR  300
PATAHGGSAP DSTAFVPDIC SPDSCFPATT SKRRRQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.11e-160B-box zinc finger protein 22
TrEMBLA0A0E0KZM60.0A0A0E0KZM6_ORYPU; Uncharacterized protein
STRINGOPUNC05G06230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-48light-regulated zinc finger protein 1