PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G06530.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 309aa    MW: 34973 Da    PI: 6.5156
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G06530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.51.5e-15159235290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       Yn+YAk+vGFs+++++s+ks ++ge         +  k++++ k+   +r+++ + +  Cka+++vk++  ++wev+++++eH+H+l+
  OPUNC05G06530.1 159 HYNRYAKRVGFSIKINTSRKSAKDGE---------RD-KKKKRVKH-APQRKRSRTRQAACKARMTVKRK-GARWEVIQFVEEHTHPLV 235
                      6********************88882.........22.23333333.567777888899**********9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-12159235IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDEDR SETYFPINPT DTSMENPAIN LDDTFDFETM  60
YTAGDAGSLQ AHNVANDEMQ VFEANDEMQV FEEMSHHADT MHTSVATGAT TATANTISSE  120
DSGTDDSEAQ SVPSQDFPCS TQVPYLTLTF NSEEEVRAHY NRYAKRVGFS IKINTSRKSA  180
KDGERDKKKK RVKHAPQRKR SRTRQAACKA RMTVKRKGAR WEVIQFVEEH THPLVRKFSL  240
KKFLRSHRAI PKEEKDFITM LHGVNLSAGG IMQLMSELYG GATNVPYTRK DISNFKSKLG  300
SEYRCRDIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189ERDKKKK
2186199KKKKRVKHAPQRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040271e-174AP004027.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1136_C11.
GenBankAP0149621e-174AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.11e-42protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0E0KZR10.0A0A0E0KZR1_ORYPU; Uncharacterized protein
STRINGOPUNC05G06530.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP559546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-18FAR1-related sequence 5