PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G07280.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 197aa    MW: 20765.8 Da    PI: 6.0228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G07280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  OPUNC05G07280.1 44 YECVFCKRGFTTAQALGGHMNIH 66
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-64271No hitNo description
PfamPF139122.5E-54367IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.994471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKAGSNNESR GTDDHAAPGA PWDEGADAAA PMSSSPPAMA RPYYECVFCK RGFTTAQALG  60
GHMNIHRRDR ANKPGPGAAP RDASTTMSRS VECHSQYRHL AAYLPAAMPV VTSGAAGSSS  120
FAMYYGSTAG AEVAVGPREL SLFDAATDHG LHLGVRRSGD GDGGESQTPE ESEEQVAGEV  180
PERELDLELR LGRHTKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454771e-119AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149611e-119AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805746.13e-45uncharacterized protein LOC112884551
TrEMBLA0A0E0KZZ11e-142A0A0E0KZZ1_ORYPU; Uncharacterized protein
STRINGOPUNC05G07280.11e-142(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-16C2H2 family protein