PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G07410.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 304aa    MW: 34341.3 Da    PI: 7.1609
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G07410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.8e-20144205359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                      Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++ ++  ++ + +++Y g+H+++
  OPUNC05G07410.1 144 DGHQWRKYGQKNINNSNHQRSYYRCTYKheqNCKATKTVQQLDSagETIMYTVVYYGQHTCK 205
                      9**************************9999*********9766115567899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-22133205IPR003657WRKY domain
SuperFamilySSF1182903.14E-21137206IPR003657WRKY domain
SMARTSM007741.2E-32142206IPR003657WRKY domain
PROSITE profilePS5081114.458144205IPR003657WRKY domain
PfamPF031061.6E-23144205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKNKSSSCRY LPHSSAPCST DDTRCFRCDH RPAIDEIVRE QSLVTQLRAV VLPALETKAD  60
GRAEIVAQLF GSILDCSRKV ISALNSRYVG ESPPDDEIVD KRRAKRKNSE GKKGDEVKAK  120
QHEHKRSRRY TNSTSQVTPV PHYDGHQWRK YGQKNINNSN HQRSYYRCTY KHEQNCKATK  180
TVQQLDSAGE TIMYTVVYYG QHTCKTNMSN APLHVVETST PQSISTTCSD DLGDYSQKIE  240
NMHTPELAEV CSDELGSYHA IIGAEHSALG LEDEYMHRLL DTFACGALDL DSWEIDAIVR  300
SGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-141442051069OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354200.0AC135420.4 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638919.10.0probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0E0L0070.0A0A0E0L007_ORYPU; Uncharacterized protein
STRINGOPUNC05G07410.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-22WRKY DNA-binding protein 70