PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G10010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 250aa    MW: 26477.4 Da    PI: 4.5915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.26.2e-2766125258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  OPUNC05G10010.1  66 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 125
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-2757125IPR003657WRKY domain
SuperFamilySSF1182909.81E-2562125IPR003657WRKY domain
SMARTSM007748.1E-3765127IPR003657WRKY domain
PROSITE profilePS5081121.49466123IPR003657WRKY domain
PfamPF031063.9E-2566125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDEVLAQISE GFRLAGELMS ELAATQNDPD YLAARCDAIA AARESGEKVT VMVAAQRTGN  60
TELPPDDGYT WRKYGQKDIL GSRYPRSYYR CTHKNYYGCE AKKKVQRLDD DPFTYEVTYC  120
GNHTCLTSTT PLLTLPAAAA TTSVTNSPTS AVLGQDLVMA PAAEQPLSTS IHLGIGWPMT  180
PASLAGVGEG STGAATEQVT MATAGGGGAA TRDTDHYPVA DLADVMFNSG GSGSSSIMDA  240
IFSSHDRRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-2266125968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878171e-173AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692544.11e-118PREDICTED: LOW QUALITY PROTEIN: WRKY transcription factor 55-like
TrEMBLA0A0E0L1050.0A0A0E0L105_ORYPU; Uncharacterized protein
STRINGOPUNC05G10010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-42WRKY DNA-binding protein 55