PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G12560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 74aa    MW: 7850.94 Da    PI: 3.9751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G12560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS38.22.1e-1236297153
             GRAS  97 taNqaIleavege.ervHiiDfdisq.GlQWpaLlqaLasRpegpp.slRiTgvgspesg 153
                      +aN  I e +e e   vH+iD++ +    QW+ L + La+Rp++pp  l +T+v+++e +
  OPUNC05G12560.1   3 AANLSIAELMEAEwGVVHVIDLGGGAdVNQWVELVHLLAARPDDPPsLLHLTVVNKAEDF 62 
                      79***********9999*****9875278*************8888578*****997755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.35174IPR005202Transcription factor GRAS
PfamPF035147.3E-10362IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MAAANLSIAE LMEAEWGVVH VIDLGGGADV NQWVELVHLL AARPDDPPSL LHLTVVNKAE  60
DFLSAAATYI TVEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.13e-23scarecrow-like protein 3
TrEMBLA0A0E0L1W17e-45A0A0E0L1W1_ORYPU; Uncharacterized protein
STRINGOPUNC05G12560.11e-45(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012