PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G12600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 562aa    MW: 59061.7 Da    PI: 7.8148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G12600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.64e-751595604374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                       L +cAea+ ++    a+a La +  las dgd++qR+aa f+eALa+ + rs+ ++++al ps++  +     e+ +a++ f +++P+l ++ 
  OPUNC05G12600.1 159 HLRRCAEALVASRSVDADAELASIARLASADGDAVQRVAAAFAEALAQLVIRSWRGVSAALFPSDAGGDAlsAWEAEFARQSFLNLCPLLHLAA 252
                      6889*********************************************************888887766667788889999************ PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      ++ N+ Ile + +++ +HiiD++  + ++W+ LlqaL +R+   p lR+T+v++    +k+ l++ ++ L    e+ gvp++ ++ v++++e+l
  OPUNC05G12600.1 253 VAVNEIILETTRNDKFIHIIDLGGVHHAHWVELLQALGTRRVIRPCLRLTVVHE----HKHLLSQAAQILVTESERHGVPLDLHI-VESSVEAL 341
                      ******************************************************....99************************9.799***** PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                      +l++L v+++ a+++ + lqlhrl+                          +v+++s+ d++L+ +  lsPk+++++e+ea+h  +sF++rf++
  OPUNC05G12600.1 342 KLDALGVRSDHAVVIVSTLQLHRLVgtgilntatgqritptpavgiaspLPPVTMSSKLDRLLRGFHLLSPKIIILTENEANHFVPSFMDRFAS 435
                      **********************************************999889999999************************************ PP

             GRAS 260 aleyysalfdsl.eaklpres...eerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllrkvks 346
                      al++y  lf s+ e++l+++     er+ vE+ ll++ei++++ac ++  r +rhe l++W  r+++aGF   p  +  +aa  ++++ ++ ++
  OPUNC05G12600.1 436 ALSHYQQLFSSMeEVSLAPAFgqpAERKAVEKYLLKEEIKDIIACDHDGpRWARHEPLGRWIVRMGAAGFMLSPAITvvTAAGRVRAVAARLPG 529
                      ************8889888767789*********************9988********************866654411566667777777764 PP

             GRAS 347 dg...yrveeesgslvlgWkdrpLvsvSaWr 374
                       g   y v e sg+l+l  +++p++ vSaWr
  OPUNC05G12600.1 530 GGderYGVTEGSGWLILNREEKPMFCVSAWR 560
                      44556*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.195130535IPR005202Transcription factor GRAS
PfamPF035141.4E-72159560IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEKGSSSTPS SAANTSEPAA AAATTAVPMT NFQLFGSMVP VPVASMATAT APAAVAAADN  60
GGHGSSSASQ NASGSAQGQG GNMSLSLQLR PLGSTPAPAV LVPPMAAAPM MTGPAGAAAP  120
APLATMAVAE NASLAAVATA LAAHRRNQAT HRSAALHGHL RRCAEALVAS RSVDADAELA  180
SIARLASADG DAVQRVAAAF AEALAQLVIR SWRGVSAALF PSDAGGDALS AWEAEFARQS  240
FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IIDLGGVHHA HWVELLQALG TRRVIRPCLR  300
LTVVHEHKHL LSQAAQILVT ESERHGVPLD LHIVESSVEA LKLDALGVRS DHAVVIVSTL  360
QLHRLVGTGI LNTATGQRIT PTPAVGIASP LPPVTMSSKL DRLLRGFHLL SPKIIILTEN  420
EANHFVPSFM DRFASALSHY QQLFSSMEEV SLAPAFGQPA ERKAVEKYLL KEEIKDIIAC  480
DHDGPRWARH EPLGRWIVRM GAAGFMLSPA ITVVTAAGRV RAVAARLPGG GDERYGVTEG  540
SGWLILNREE KPMFCVSAWR RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2417556022375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057670.0AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0scarecrow-like protein 3
TrEMBLA0A0E0L1W50.0A0A0E0L1W5_ORYPU; Uncharacterized protein
STRINGOPUNC05G12600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-45scarecrow-like 3