PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G12990.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 239aa MW: 24733.2 Da PI: 8.4137

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G12990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.8	1.6e-69	11	177	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 +sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + ass ++sa ++a++k++r l s++++++s+t++ OPUNC05G12990.1 11 GSGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGGASSPPTSSAfpatTTASAKKPRLLGSQTTTTTSRTST 104 57889**********************************************99999999998888988999999*9******** PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+a+++++++tss lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++ OPUNC05G12990.1 105 SNATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 177 *******999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-61	14	176	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.6E-27	16	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.5E-26	128	174	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MLDYGGVGPG GSGAATCHDC GNQAKKDCVH HRCRTCCKSR GFDCPTHVRS TWVPAARRRE 60 RQQLAGGASS PPTSSAFPAT TTASAKKPRL LGSQTTTTTS RTSTSNATTP RSFDTSSSHQ 120 VASFRDALPR HVRAPAVFRC VRVTSVDDGD DEFAYQAAVT INGHMFRGFL YDQGADDGRG 180 GGGMASTSND DSSHAAAAVP SLSDLHLGSA SAAVPPHLYD GGSGGPLILG GLGYGNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104710	1e-175	AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBank	AC136219	1e-175	AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBank	AP014961	1e-175	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-175	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881073.1	1e-126	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	5e-61	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0E0L207	1e-173	A0A0E0L207_ORYPU; Uncharacterized protein
STRING	OPUNC05G12990.1	1e-174	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	6e-51	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]