PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G13550.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 647aa    MW: 69553 Da    PI: 5.2617
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G13550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.63.6e-15299352255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                       r  Wt+  H++Fv+a +qL  +++  Pk+i++lm+++g+  t ++v SHLQkYR+
  OPUNC05G13550.1 299 SRFTWTTVSHTSFVKAYNQL--KDQEGPKRIKQLMELDGIfvTKTQVSSHLQKYRS 352
                      699*****************..999**************655999**********6 PP
2Response_reg59.51.9e-20251301107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+vdD+ + +e l+ +l  +gy  v+  ++geeal+ lk++    +D++++D+ m gmdG++ll +i+    +lp+i+++  ++  ++ + + 
  OPUNC05G13550.1  25 VLVVDDDAAYLEELKLMLLLSGY-AVTGKTTGEEALQELKQNPkdyFDIVMTDVHMAGMDGFDLLHRING---RLPVIMFSEGEDVVMVMRTVM 114
                      89*********************.***************8887888**********************88...67******************* PP

                      TTESEEEESS--HHHH CS
     Response_reg  92 aGakdflsKpfdpeel 107
                       Ga d+ +Kp+  e +
  OPUNC05G13550.1 115 DGACDYMVKPMTSETI 130
                      **********988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-2722140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-2822139No hitNo description
SMARTSM004481.2E-2223134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.85824138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-1825130IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.47E-1926138No hitNo description
SuperFamilySSF466897.17E-9298356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-14298355IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-11299352IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAENNGAVPP GCKLPAGGFL GRLHVLVVDD DAAYLEELKL MLLLSGYAVT GKTTGEEALQ  60
ELKQNPKDYF DIVMTDVHMA GMDGFDLLHR INGRLPVIMF SEGEDVVMVM RTVMDGACDY  120
MVKPMTSETI KFIWKHVLCW RLSALPTHAS SLPSDRLAVA LAAVAPPPLL TGSTQGDGQE  180
VVLTAAPPPS SPASAKNNRR GHDIQEVASA ALPPAPTQAG NKDGDIQEEA LTRSPALMPS  240
GNRRSDIQEV AATWSNRADG QEATAAMTKA PSKKRGASEV SDRGSNNFEV MTGRKKVRSR  300
FTWTTVSHTS FVKAYNQLKD QEGPKRIKQL MELDGIFVTK TQVSSHLQKY RSWLENERKK  360
EEATGSSPYN PLSYTNCLDR GYSTWKQSPI ITEGQLAGTF SGRPIHSMAI SNTQSNYVGV  420
GAKEIENFIS SHQRSLGTTA IGQESTIRQA SLHSEVTLVS RDVHANGSSQ ARGSAMSNGT  480
SGPRGVLVTD ENVLQVVSAS LPSNMGQPMQ PSQSFCTNDL AANFSIIRDQ NPATSHPTNS  540
SAIVNQNSMT QEMSVSQTVE LGYGNNVMLD WPEFGGLDDQ LDNDMLMNSF FDGDLLQQGV  600
VTAIDGTQEM LAFDSTVDLG SVPPGGLNNG IASQENTNGK NGAPSGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324830.0AC132483.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0014C03, complete sequence.
GenBankAC1349320.0AC134932.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092G21, complete sequence.
GenBankAK2427220.0AK242722.1 Oryza sativa Japonica Group cDNA, clone: J090045F10, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639050.10.0two-component response regulator ORR27
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0E0L2690.0A0A0E0L269_ORYPU; Uncharacterized protein
STRINGOPUNC05G13550.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-22response regulator 1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]