PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G16010.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 259aa MW: 28992.9 Da PI: 5.5169

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G16010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.1	2.5e-34	4	122	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppG+rF Pt+eelv++yL++k++g++++ i++v + w+ ++ + w++F++r++++a+g r++r+t sgyWka g+ ++s OPUNC05G16010.1 4 LPPGYRFYPTEEELVCFYLRHKLDGRRVPD---IERVIPVADGAWT------GDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWIYS 88 79***********************665...4444333333343......46789********************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+ +g+kkt+vfy+grap g+kt+W m+eyr+ OPUNC05G16010.1 89 SDGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 122 ******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-41	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	38.825	4	155	IPR003441	NAC domain
Pfam	PF02365	2.8E-24	5	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGELPPGYRF YPTEEELVCF YLRHKLDGRR VPDIERVIPV ADGAWTGDGE PWFYFCPRQE 60 REARGGRPSR TTPSGYWKAA GTPGWIYSSD GRPIGTKKTM VFYRGRAPAG TKTKWKMNEY 120 RAFEEDDDNA DAAAPAPNHY LQTRSEFSLC RLYTRSGCPR QFDRRPTSSV AGGGSENRAA 180 PPSSTAAAFA NEDDAEAIGK GQKRKRSAPD DRLDSTSSND DNGGGDGSML QRQQLRQRGT 240 DEELVECNMT DWADLLDWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-28	4	155	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-28	4	155	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-28	4	155	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-28	4	155	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-28	4	155	20	168	NAC domain-containing protein 19
3swm_B	4e-28	4	155	20	168	NAC domain-containing protein 19
3swm_C	4e-28	4	155	20	168	NAC domain-containing protein 19
3swm_D	4e-28	4	155	20	168	NAC domain-containing protein 19
3swp_A	4e-28	4	155	20	168	NAC domain-containing protein 19
3swp_B	4e-28	4	155	20	168	NAC domain-containing protein 19
3swp_C	4e-28	4	155	20	168	NAC domain-containing protein 19
3swp_D	4e-28	4	155	20	168	NAC domain-containing protein 19
4dul_A	3e-28	4	155	17	165	NAC domain-containing protein 19
4dul_B	3e-28	4	155	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063703	0.0	AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBank	JN185442	0.0	JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638341.1	1e-141	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-59	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0E0L335	0.0	A0A0E0L335_ORYPU; Uncharacterized protein
STRING	OPUNC05G16010.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-60	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]