PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 386aa    MW: 41869.6 Da    PI: 6.0534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.8e-06207226120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  OPUNC05G16080.1 207 FVCHVCNKAFNRYNNMQMHM 226
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.601.106.1E-4114167No hitNo description
SuperFamilySSF576672.35E-5203230No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5207226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
PROSITE profilePS508688.135252268IPR003616Post-SET domain
SuperFamilySSF576676.88E-5278314No hitNo description
Gene3DG3DSA:3.30.160.607.0E-4281314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVLRACTMVE GSGFGGGVPF FEWLKPRSSP PPSPSPSPSS SSTTTSSSLT AQQPRGSAGT  60
MLCLPLLGRL GEEPVADDDG AMNNPPVKEE VSNTTDDYAG VDLNIGLPAT GGCSSEDAPM  120
DEDEEDDDDD DEEEEETEDD EEKAAGHDGC KVEEEREQVH SEGSKYYVSV GGEDQSSNAG  180
DVDAGACRGR RYWIPTPAQI LIGPVQFVCH VCNKAFNRYN NMQMHMWGHG REYRKGPESL  240
KGTQATATLA LLKLPCYCCA AGCRNNVGHP RARPLKDFRT LQTHYKRKHG AKPFACRRCA  300
KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGGGHFPVAA TAAPACAAAA  360
PPPKQQQRII RFDDAMATMH GGGLMN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.10.0protein TRANSPARENT TESTA 1 isoform X1
SwissprotQ9SGD15e-98ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0E0L3420.0A0A0E0L342_ORYPU; Uncharacterized protein
STRINGOPUNC05G16080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-90WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]