PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 619aa    MW: 68232.8 Da    PI: 8.6423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-0864101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WT+eEde+l +av  + g++Wk+I           qc +rwqk+
  OPUNC05G16800.1  64 KGGWTPEEDEKLRKAVDIYNGKNWKKI----E-----VQCLHRWQKV 101
                      688***********************5....3.....4577777775 PP
2Myb_DNA-binding58.21.9e-18108154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed+ ++++vk++G++ W+ Iar ++ gR +kqc++rw+++l
  OPUNC05G16800.1 108 KGPWTQQEDDVIINLVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 154
                      79******************************.*************97 PP
3Myb_DNA-binding51.52.3e-16160203146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  OPUNC05G16800.1 160 KEAWTVEEEHVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 203
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.08259102IPR017930Myb domain
SuperFamilySSF466891.08E-1162116IPR009057Homeodomain-like
SMARTSM007171.6E-463104IPR001005SANT/Myb domain
PfamPF002497.5E-664101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1366109IPR009057Homeodomain-like
PROSITE profilePS5129430.357103158IPR017930Myb domain
SuperFamilySSF466896.24E-31105201IPR009057Homeodomain-like
SMARTSM007171.1E-16107156IPR001005SANT/Myb domain
PfamPF002499.3E-17108154IPR001005SANT/Myb domain
CDDcd001675.75E-15110154No hitNo description
Gene3DG3DSA:1.10.10.609.6E-25110157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-22158209IPR009057Homeodomain-like
SMARTSM007173.3E-13159207IPR001005SANT/Myb domain
PROSITE profilePS5129421.01159209IPR017930Myb domain
PfamPF002495.3E-15160203IPR001005SANT/Myb domain
CDDcd001672.14E-10162205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MPAVKVEEEE EEEEEVEERN PVASSPSVSE GSAHAALASP VAATTPADSV FGRRRKSGPV  60
RRAKGGWTPE EDEKLRKAVD IYNGKNWKKI EVQCLHRWQK VLDPELIKGP WTQQEDDVII  120
NLVKKHGPKK WSVIARSLNG RIGKQCRERW HNHLDPQIRK EAWTVEEEHV LARAHCMYGN  180
KWAEIAKLLP GRTDNSIKNH WNSSLRKKMD DYNTRNILPL QPPVVGDDLK QLPKRPPADN  240
HFDLNKEPII CSRDRLGVVH SDPTSHQRAS NLKYFKGCAD YLSLGQPVTS CEASAADDSA  300
FDLATQGMRM DSVHDKGTGN NFVCGKVQGI NFLGDKGLKI NQISDKMGCS RQAKREGEAA  360
INSGGSSLQS EAHSVGSLCY QIPKMEDIAP AESPVFTANY VPEHSRNVMH SPNGYTTPSP  420
THGKGSDQLS VESILRSAAE KFHGTPSILR RRKRDKPTPA EDNDLKIGRL SSDDFHTPIG  480
KSTTDSPQSF KTAALLSLGP MDGQGFSTAS GSLDVSPPYR LRSKRLAVLK TVQNHLDFSS  540
DEMSICDTTM KSACGNSDCA NASSGVSSIQ GKKLDEHMIG LETLTMNFAH TTKTTTNVLK  600
WARRPDASKL NVVTVPKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-63632095159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-63632095159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449456RRRKRDKP
2450455RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0L3E20.0A0A0E0L3E2_ORYPU; Uncharacterized protein
STRINGOPUNC05G16800.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-95myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]