PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 121aa    MW: 12973.7 Da    PI: 11.8165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000784466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C  Cg++F++   L  H  +H
  OPUNC05G16950.1 44 FDCRTCGRRFPTFQALGGHRTSH 66
                     77**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-54268No hitNo description
PfamPF139121.4E-94366IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6164471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139121.8E-889109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDGGVDTARV LMLLSRRRRQ QQHGDVGGGG SMRDQGHARA ARVFDCRTCG RRFPTFQALG  60
GHRTSHTRLQ AKLLSDPAAA ASAAAERAVC GVEFSMGQAL GGHMRRHRGE TGTTTVDIAR  120
C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087612e-42AC108761.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence.
GenBankAP0149652e-42AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAY3058672e-42AY305867.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP21 (ZFP21) mRNA, complete cds.
GenBankCP0126172e-42CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634661.15e-36zinc finger protein ZAT8
TrEMBLA0A0E0L3G01e-79A0A0E0L3G0_ORYPU; Uncharacterized protein
STRINGOPUNC05G16950.12e-80(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-22C2H2 family protein