PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16980.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 206aa    MW: 21904.7 Da    PI: 10.0269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00115274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C  Cg++F++   L  H  +H
  OPUNC05G16980.1 52 FDCRTCGRRFPTFQALGGHRASH 74
                     67**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.81E-75074No hitNo description
PfamPF139122.5E-105176IPR007087Zinc finger, C2H2
SMARTSM003550.725274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3255279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576673.81E-7111138No hitNo description
PfamPF139126.8E-9115140IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621116143IPR007087Zinc finger, C2H2
SMARTSM003551.3116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSKRQFGEMD GGVDTARVLM LLSRRRRQQQ HGDVGGGGSM RDQGHARAAR VFDCRTCGRR  60
FPTFQALGGH RASHKRPRHA ARAPPPAGDD DVGAPSSTEE AREVGRGGDG RKRAAHGCPV  120
CGLEFAVGQA LGGHMRRHRA AASDVAHGGA RAAARVKVDD VVVGDECTGG VCLDLNLTPS  180
ENCAKCRHAQ LGVNSLQRTI LLDYPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172652e-61AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149612e-61AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-61CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881071.16e-94zinc finger protein ZAT12
TrEMBLA0A0E0L3G31e-144A0A0E0L3G3_ORYPU; Uncharacterized protein
STRINGOPUNC05G16980.11e-145(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-18C2H2 family protein