PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G17180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 180aa    MW: 18524.6 Da    PI: 7.3426
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G17180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.97.4e-5937133197
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre+e
  OPUNC05G17180.1  37 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 130
                      69******************************************************************************************** PP

            NF-YB  95 gek 97 
                      g++
  OPUNC05G17180.1 131 GDS 133
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.7E-5536141IPR009072Histone-fold
SuperFamilySSF471132.64E-4040137IPR009072Histone-fold
PfamPF008082.3E-2843107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-227189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-2290108No hitNo description
PRINTSPR006151.2E-22109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MADGPGSPGG GGGSHESGSP RGGGGGGGGG GGGGGGVREQ DRFLPIANIS RIMKKAIPAN  60
GKIAKDAKET VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIEPLK  120
VYLQKYREME GDSKLTAKAG DGSVKKDILG SHGGGSSSSA QGMGQQAAYN QGMGYMQPQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-5036128193NF-YB
4awl_B3e-5036128294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-5036128294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1008110.0AK100811.1 Oryza sativa Japonica Group cDNA clone:J023121O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568278.12e-97nuclear transcription factor Y subunit B
SwissprotP252093e-95NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A0E0L3J31e-126A0A0E0L3J3_ORYPU; Uncharacterized protein
STRINGOPUNC05G17180.11e-127(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-70nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]