PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G18000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 206aa    MW: 22590.6 Da    PI: 4.2084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G18000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.51.3e-231984159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59
                     +dD++ WrKYGqKe+k+s++pr YYrC+++   gCp++k+v++s+++ +    v +itY geH+++
  OPUNC05G18000.1 19 MDDKFLWRKYGQKEIKNSKYPRFYYRCSYKddhGCPATKQVQQSETNDDttspVYDITYFGEHTCR 84
                     58***************************99999*********9876551223568*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.811474IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-241584IPR003657WRKY domain
SuperFamilySSF1182901.44E-221684IPR003657WRKY domain
SMARTSM007742.7E-341985IPR003657WRKY domain
PfamPF031061.3E-242084IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRASNGGGKG ARIERKATMD DKFLWRKYGQ KEIKNSKYPR FYYRCSYKDD HGCPATKQVQ  60
QSETNDDTTS PVYDITYFGE HTCRPGRDDA AAELVDGDDE SSTREQFVIS FASNGGDASV  120
CWPSSGDDSQ NNSETSQESC TATDGASGEP ILLESTPPAP ELPDLMKPMD GCLLDGESLF  180
GTDELIYFHE LSAALGLLDR DWGAPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-171984869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447371e-120AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149611e-120AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-120CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.11e-108probable WRKY transcription factor 38
TrEMBLA0A0E0L3U61e-152A0A0E0L3U6_ORYPU; Uncharacterized protein
STRINGOPUNC05G18000.11e-153(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-20WRKY DNA-binding protein 70