PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G18630.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 411aa MW: 46035.3 Da PI: 7.1082

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G18630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9.1e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl OPUNC05G18630.1 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.387	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-32	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-22	145	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MYHQHQGRSD LFTTRTSFPM ERHLFLHGGN TQGDSGLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQGQANVGT TKNALGCTAV 120 VDRIPGTSAL AMASANAIPQ AEKTIQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK 180 YLQAVLEQAQ ETLGKQNLGP ASLEDAKIKI SELVSQVSNE CLSNAVTEIR ESSSIHRLEP 240 RQIQFVESSA NNSLTAAEGF KEHRLQNHGV LKAYDDSTLF CRKQSQDQES QYSLNRSLSE 300 RRMGHLYNGK QYHKAEGSDS DTEVLHEYIT PQKNGGGSTT SSTSGSKEIN VEKLYLDEPS 360 CKRQAVDYQR ESKLLDFDQQ SSGKNLDLNT HNIDDNDQGY RHFDLNGFSW S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MYHQHQGRSD LFTTRTSFPM ERHLFLHGGN TQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQGQANVGT TKNALGCTAV  120
VDRIPGTSAL AMASANAIPQ AEKTIQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK  180
YLQAVLEQAQ ETLGKQNLGP ASLEDAKIKI SELVSQVSNE CLSNAVTEIR ESSSIHRLEP  240
RQIQFVESSA NNSLTAAEGF KEHRLQNHGV LKAYDDSTLF CRKQSQDQES QYSLNRSLSE  300
RRMGHLYNGK QYHKAEGSDS DTEVLHEYIT PQKNGGGSTT SSTSGSKEIN VEKLYLDEPS  360
CKRQAVDYQR ESKLLDFDQQ SSGKNLDLNT HNIDDNDQGY RHFDLNGFSW S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241362	0.0	AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640413.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_015640414.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_015640415.1	0.0	myb-related protein 2 isoform X1
TrEMBL	A0A0E0L422	0.0	A0A0E0L422_ORYPU; Uncharacterized protein
STRING	OPUNC05G18630.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	7e-98	G2-like family protein