PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G18870.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 257aa MW: 28559.2 Da PI: 6.6384

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G18870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1.1e-32	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl OPUNC05G18870.1 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-16	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-25	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-24	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MMYHAKKFSV PFGPQSTQSS ELMNNIGAFG GSNMGSPANP AGSGKQRLRW TSDLHNRFVD 60 AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKDEKKDSSD 120 SLSNTDSAPG MQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQM IIEEQQKLGG 180 SLKACEEQKL PHSPPSLDDY PDSMQPSPKK PKMDNLSPDS VRDVRESDFE SHLIGPWDQE 240 AAFQVDEFKP DPGLNKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061987	0.0	AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBank	AK069306	0.0	AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639152.1	0.0	myb family transcription factor PHL7
Refseq	XP_015639153.1	0.0	myb family transcription factor PHL7
Refseq	XP_015639154.1	0.0	myb family transcription factor PHL7
Refseq	XP_015639155.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	3e-75	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0E0L457	0.0	A0A0E0L457_ORYPU; Uncharacterized protein
STRING	OPUNC05G18870.2	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-56	G2-like family protein