PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G19230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 236aa    MW: 24109.4 Da    PI: 9.3927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G19230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-203787256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  OPUNC05G19230.1 37 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 87
                     69*******.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.41E-183694No hitNo description
PfamPF008471.4E-133786IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-223795IPR016177DNA-binding domain
PROSITE profilePS5103223.8683794IPR001471AP2/ERF domain
SMARTSM003801.4E-3437100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-323794IPR001471AP2/ERF domain
PRINTSPR003674.8E-113849IPR001471AP2/ERF domain
PRINTSPR003674.8E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAPRTSDKTM SPAAAATGLA LGVGGVAGAA VAGTGQHFRG VRKRPWGRYA AEIRDPAKKS  60
RVWLGTFDTA EEAARAYDAA AREYRGAKAK TNFPFPAGAP AAGVNSGSSN SSTVESFGSD  120
VQAPMKAMPI PPSLELDLFH RAAAAAAAGA GGMRFPFEGY PVSHPYYFFG QAAAAAAAAS  180
GCRMLKMVPP VTVAALAHSD SDSSSIVDLA PSPPAALAKK AIAFDLDLNC PPPMEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2235108370ATERF1
3gcc_A2e-2235108370ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK1117550.0AK111755.1 Oryza sativa Japonica Group cDNA clone:J023061G02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8324820.0CT832482.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010C22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637538.11e-104ethylene-responsive transcription factor 4
TrEMBLA0A0E0L4A41e-166A0A0E0L4A4_ORYPU; Uncharacterized protein
STRINGOPUNC05G19230.11e-167(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-18erf domain protein 9