PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G19240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 676aa    MW: 73961.7 Da    PI: 9.5914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G19240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.1e-07123144325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       + C f+a+ G Ck G +C+F H
  OPUNC05G19240.1 123 KRTCIFYAQ-GRCKNGKSCTFLH 144
                      578******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.5E-5119145IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074120146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6120145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249120147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAGAGRGAGL PAADEAAKAG RVGVGTTKRA RDPSPNSKDP NGFVGVLAAE KKPALQLHGD  60
DKYQKKAGNV PVPPIIDDTS KTGGLHMHGG HVSQSSPDSN TLSSQQRFGS SSPGGDMKNK  120
TRKRTCIFYA QGRCKNGKSC TFLHEGEVSG SDNQGYGNHR GTGEGSEIQH LSNSKEPQFK  180
NSAGSSQHEI YRTLVHAYGE DNRGLTHPVV KHSCHMLKAS HGFKIGGPLT TNPTNEVVQF  240
PVVQEKNHGP YFMGHQISLN TNSCLDDMGA YSRLRLDGGK LQFDVAKGDS PRDSHISRSY  300
LEKNPLKPDY RYQPFNSTIS FDPHQYSKKS SADGGATENL PHKHQEEKSS SHASYSLDSY  360
TGFRNQGHDS SDFSLVNQSL RATSHPPTLP LRQLTPDKDA SHHKDADFDK GGTSRSTLLV  420
SSSPQPVVAS AGKLSPIKDE VWITSVPFVP SFNFPSSTSP SKSQYDPLVD SIDPPKVESL  480
NNLKISNISC SISSQHVDTN VIRGGSLEKP LTCADKLARN VSAKGSNDFG LISYDRGHSS  540
SLDGDNRVKT CERKHDASLN NEKADFRFHL VEHVKELVKP IWKEGNLSKE AHKLIVKKSV  600
DKIFASLEPN QMPETEKAIT TYITASAPKI EKLVKIIRVS KVDKRVWKEK CRNWPYDALA  660
SFYRVKAKTD MAIWVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAC1306050.0AC130605.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0010D04, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0E0L4A50.0A0A0E0L4A5_ORYPU; Uncharacterized protein
STRINGOPUNC05G19240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-12C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]