PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G19420.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 426aa    MW: 45705.1 Da    PI: 5.8228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G19420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.31.8e-77354232373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilk 92 
                      ++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar  r +    +a+   e  +     +++++++l  +++++P+++
  OPUNC05G19420.1  35 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACRLCAAPGAAVGFLERGRVPpWGRAMSVTELadYVDLTPWHR 128
                      699***************************************************8877777776666665554555555566688********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.. 181
                      f++ + N aIl+av+g++ vH++D+++++++QWp+L++ L++Rp+g+p +RiT+ +   ++    + + +e+g rLa fA++ gv++efnv+  
  OPUNC05G19420.1 129 FGFTASNAAILRAVAGASSVHVVDLSVTHCMQWPTLIDVLSKRPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQLEFNVVes 222
                      *****************************************************9887555578889999***********************98 PP

             GRAS 182 .................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                                       ++++l+++  ++ +L ++ gEal+Vn++  l ++       ++ rd +L++v+ l+P +v+v++++ad++s+s++ r
  OPUNC05G19420.1 223 attttatspkktmttstLCQELATVlsDPPSLGLRDGEALVVNCQSWLRHVA------PDSRDLFLDTVRALNPCLVTVTDEDADLDSPSLASR 310
                      888887777666544433333333366778889999************9998......56689******************************* PP

             GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                      ++ ++++++ l+d+l++++p++s  r   E++ +gr+i++v++ e  +  er e+ ++  er+++  F  v ++e+aa+++++ll++++  g+ 
  OPUNC05G19420.1 311 MAGCFDFHWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVISDEDGA--ERSESGARLAERMRQKEFAGVVFDEEAAAEVRRLLSEHA-TGWG 400
                      **************************999999.************998..9**************************************.99** PP

             GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                      v+ e++ lvl+Wk++  v++ aW
  OPUNC05G19420.1 401 VKREDDMLVLTWKGHGAVFTGAW 423
                      *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.8648405IPR005202Transcription factor GRAS
PfamPF035146.2E-7535423IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDMEHELRGG GVGAAAHGSI CFSGGPVLVD GRRIQQLLLH CAAALESNDV TLAQQAMWVL  60
NNIASSQGDP SQRLTSWLLR ALVARACRLC AAPGAAVGFL ERGRVPPWGR AMSVTELADY  120
VDLTPWHRFG FTASNAAILR AVAGASSVHV VDLSVTHCMQ WPTLIDVLSK RPGGAPAIRI  180
TVPSVRPAVP PLLAVSSSEL GARLAIFAKS KGVQLEFNVV ESATTTTATS PKKTMTTSTL  240
CQELATVLSD PPSLGLRDGE ALVVNCQSWL RHVAPDSRDL FLDTVRALNP CLVTVTDEDA  300
DLDSPSLASR MAGCFDFHWI LLDALDMSAP KDSPRRLEQE AAVGRKIESV ISDEDGAERS  360
ESGARLAERM RQKEFAGVVF DEEAAAEVRR LLSEHATGWG VKREDDMLVL TWKGHGAVFT  420
GAWAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-433742536420Protein SHORT-ROOT
5b3h_E4e-433742536420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133320.0AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence.
GenBankAC1305970.0AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence.
GenBankAK0704890.0AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638716.10.0scarecrow-like protein 32
TrEMBLA0A0E0L4C20.0A0A0E0L4C2_ORYPU; Uncharacterized protein
STRINGOPUNC05G19420.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-100GRAS family protein