PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G19450.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 152aa MW: 16677.7 Da PI: 9.2175

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G19450.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	64	79	39	54
TCHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksL 54 + a++L +A+eYIk L OPUNC05G19450.2 64 DTASVLHEAIEYIKFL 79 679***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-8	46	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.73E-4	46	84	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-6	51	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MVQSNTTERL HHHQDAGSPA TRSSPGSPAA AKKPRIEAPS PLPTFKVRKE KLGDRITALQ 60 QLTDTASVLH EAIEYIKFLH DQVASLSSPY LRCGRPMQLQ HQQGSHKAND NGEGTQDLRS 120 RGLCLVSVAS TYTVASETAT EFWHPTFGGT FR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837834	1e-123	CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638164.1	4e-89	transcription factor bHLH68 isoform X1
Refseq	XP_015638165.1	4e-89	transcription factor bHLH68 isoform X2
Swissprot	Q94JL3	1e-41	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A0E0L4C6	1e-109	A0A0E0L4C6_ORYPU; Uncharacterized protein
STRING	OPUNC05G19450.1	1e-105	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	6e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]