PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G19900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 372aa    MW: 41235.8 Da    PI: 8.1499
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G19900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.7e-1483120340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk 
  OPUNC05G19900.1  83 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKA 120
                      89**********************************85 PP
2TCR505.9e-16168204339
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedC+N 
  OPUNC05G19900.1 168 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 204
                      589********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-1281122IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.30382206IPR005172CRC domain
PfamPF036385.5E-1084119IPR005172CRC domain
SMARTSM011141.7E-15166207IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.6E-11169203IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEATPISVKP PSPVAAAPPP APVQVPVPPP PPPPPPAAAM EPLAPQPVAV VVAEAEPCSM  60
NQLALTPTPK RQKVEESADG NGCKHCACKK SRCLKLYCPC FAGGGYCSEK CGCQPCFNKA  120
LYAETVQTTR KVLLSRQKRM SLKINRRSEA NAEAVEDAHH SSSSTPPRRG CNCKKSSCLK  180
KYCDCYQDGT GCSLFCRCED CRNPFGKNEG IMAEESKRFL YTGADLDHSE DEHDFIVERS  240
PRLQSPISKE SSFQQTPPHV RGTNRDTHMF PQAISQWQPR SWHCSKRQSN DRVIDDSGEY  300
KNSNHDWQLS KQEDSYSISR CVQILNGMAE LSQVEKSVAP DVFLQAGNRE IFISLNGDVR  360
ALWLKRKIQN LT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-128620314120Protein lin-54 homolog
5fd3_B6e-128620314120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080530.0AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640211.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A0E0L4H70.0A0A0E0L4H7_ORYPU; Uncharacterized protein
STRINGOPUNC05G19900.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-45Tesmin/TSO1-like CXC domain-containing protein